Computational Study on Molecular Structure, UV-Visible and Vibrational Spectra and Frontier Molecular Orbital Analysis of

(E)-7-((2-Chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one

 

Vishnu A. Adole1*, Abhijit R. Bukane1, Ravindra H. Waghchaure2, Rohit S. Shinde,

Bapu S. Jagdale1

1Department of Chemistry, Mahatma Gandhi Vidyamandir’s Arts, Science and Commerce College,

Manmad, Nashik - 423104, India (Affiliated to SP Pune University, Pune)

2Department of Chemistry, Mahant Jamanadas Maharaj Arts, Commerce and Science College,

Karanjali, Taluka - Peth, District – Nashik - 422 208, India (Affiliated to SP Pune University, Pune)

*Corresponding Author E-mail: vishnuadole86@gmail.com

 

ABSTRACT:

Quinoline scaffold is one of the most often perceived parts in biologically active organic compounds. In light of this, an quinoline containing 2-arylidene derivative; (E)-7-((2-chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one (2-CQMIF) is studied by using density functional theory (DFT) at B3LYP/6-311G(d,p) basis set. The geometry of the 2-CQMIF molecule was optimized by using B3LYP/6-311G(d,p) basis set and in-depth structural analysis on bond lengths and bond angles has been discussed. The frontier molecular orbital (FMO) analysis and various quantum chemical parameters are calculated and discussed for the better understanding of chemical behavior of the title molecule. The theoretical and experimental UV-Visible absorption bands are compared. The TD-DFT method at B3LYP/6-311G(d,p) basis set was employed to predict the electronic excitations. The scaled theoretical vibrational assignments calculated at 6-311G(d,p) level are compared with the experimental results and the good agreement is observed between them. Molecular electrostatic potential (MEP) surface investigation is presented to understand the reactivity sites of the title molecule. Besides, some thermodynamic properties have also been computed at same level of theory.

 

KEYWORDS: B3LYP/6-311G(d,p), Quinoline, Time Dependent DFT, HOMO-LUMO.

 

 


INTRODUCTION:

Quinoline is a bicyclic heterocyclic moiety with massive remedial potential. Quinolines are known for their excellent antimalarial1-3, anti-inflammatory4, analgesic5, antibacterial6, antifungal7, anticancer8,9, antiviral10, anthelmintic11, antiprotozoal12, and other miscellaneous biological activities13,14. Some quinoline derivatives have also been used in the treating erectile dysfunction 15, and Alzheimer’s disease16.

 

Likewise 2-arylidene indanone skeleton has also received tremendous attention of the medicinal chemists due to its involvement in various applications. The diverse biological profile of compounds containing 2-arylidene indanone skeleton includes properties like antimalarial17 antioxidant18 antimicrobial19 anti-inflammatory20, etc. The structure of 2-arylidene indanone is similar to chalcones. Chalcones act as vital intermediates in synthetic organic chemistry, and additionally, they are found to show powerful and many biological properties21. The noteworthy biological activities shown by chalcones include anti-tubercular22, antihypertensive23, antioxidant24, anticancer25, antiviral26,   antimicrobial27, etc.

 

 

 

Green chemistry based organic synthesis has expanded tremendously in past few years28-37. Researchers are currently focusing on development of green strategies for the synthesis of organic compounds of biological importance38,39. Theoretical chemistry calculations are dependent on physicochemical calculations and quantum chemistry. DFT can predict various molecular properties. Especially, different spectroscopic investigations can be achieved: UV/Vis spectra, IR and Raman frequencies and intensities, NMR chemical shifts, and spin-spin coupling constants40-44. Likewise, DFT calculations can predict HOMO-LUMO energies, bond lengths, bond angles, dihedral angles, and spectroscopic properties45-66. The comparison of theoretical calculations with experimental results provides good deal of information. By using computation results, it has become possible to arrive at reaction mechanistic pathway. DFT method via B3LYP functional has been shown to predict theoretical properties that agree well with experimental spectroscopic findings67-74. The assignment of absorption bands and, as a result, the prediction of electronic and chemical properties of molecules is found to be accurate when using the B3LYP functional with a 6-311G(d,p) basis package49,75, 76.  In light of various aspects discussed above, here in this paper, we wish to report density functional theory investigation of previously synthesized (E)-7-((2-chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one32 (2-CQMIF). To the best of our knowledge, this the first report on computational study of the title molecule.

 

METHODS:

Computational study:

DFT calculations were performed on an Intel (R) Core (TM) i5 computer using Gaussian-03 program package without any constraint on the geometry77. The geometry of the molecules studied in this is optimized by DFT/B3LYP method using 6-311G(d,p) basis set.  The FMO analysis and quantum chemical study was performed using same basis set. The electronic excitations of title molecule have been calculated at TD-B3LYP/6-311G(d,p) level of theory for B3LYP/6-311G(d,p) optimized geometries. To investigate the reactive sites of the title molecules, the MEP was computed using the same method. All the calculations were carried out for the optimized structure in the gas phase. The experimental UV-Visible spectrum is recorded in dimethyl sulfoxide (DMSO) solvent.

 

RESULTS AND DISCUSSION:

Optimized Molecular Structure:

The optimized molecular structure of the title 2-CQMIF molecule is given in Figure 1. In Figure 2, the optimized molecular structures are presented along x,y and z Cartesian axes. The 2-CQMIF molecule is having C1 point group symmetry and the dipole moment is 5.0279 Debye. The optimized geometrical parameters; bond lengths and bond angles of the title molecule have been computed and presented here in Table 1 and Table 2. In the 2-CQMIF molecule, the C=O (C16-O20) bond length is 1.2169 Å and the C=C (C21-C22) bond length in alkene is 1.3453 Å. The C-Cl (C26-Cl35) bond length is 1.7713 Å. The imine bond lengths are 1.2912 Å (C26-N34) and 1.3639 Å (C27-N34). Amongst aromatic C=C bond lengths, C32-C36 bond is the longest (1.4148 Å) and the shortest is C30-C32 (1.3741 Å). Other bond lengths are also in good agreement. All the bond angles are also in good agreement.

 

 

Figure 1 Optimized molecular structure of 2-CQMIF molecule

 

Figure 2 Optimized molecular structures along x, y and z Cartesian axes

 

Table 1 Optimized geometrical parameters of 2-CQMIF molecule at B3LYP/6-311G(d,p) basis set

Bond lengths (Å)

C1-C2

1.3988

C9-C12

1.547

C25-C28

1.4115

C1-C6

1.3946

C12-H13

1.0937

C25-H29

1.0815

C1-H7

1.083

C12-H14

1.0892

C26-N34

1.2912

C2-C3

1.3912

C12-O15

1.4586

C26-Cl35

1.7713

C2-H8

1.0849

C16-O20

1.2169

C27-H28

1.4247

C3-C4

1.4025

C16-C21

1.5051

C27-N34

1.3639

C3- C17

1.518

C17-H18

1.0964

C27-H38

1.4137

C4- C5

1.3884

C17-H19

1.097

C28-C30

1.4182

C4-C16

1.4785

C17-C21

1.5144

C30-H31

1.0849

C5- C6

1.3918

C21-C22

1.3453

C30-C32

1.3741

C5- C9

1.5068

C22-H23

1.0853

C32-H33

1.0838

C6- O15

1.3609

C22-C24

1.4587

C32-C36

1.4148

C9-H10

1.0947

C24-C25

1.3852

C36-H37

1.084

C9-H11

1.0908

C24-C26

1.4412

C36-C38

1.3756

-

-

-

-

C38-H39

1.0828


Table 2 Optimized geometrical parameters of 2-CQMIF molecule at B3LYP/6-311G(d,p) basis set

Bond angles (°)

C2-C1-C6

118.6792

C9-C12-H14

114.0114

C24-C25-H29

119.831

C2-C1-H7

121.3271

C9-C12-O15

106.9746

C28-C25-H29

118.3896

C6-C1-H7

119.9937

H13-C12-H14

109.1494

C24-C26-H34

125.9158

C1-C2-C3

119.8758

H13-C12-O15

107.4423

C24-C26- C35

118.8301

C1-C2-H8

119.3895

H14-C12-C15

107.3166

C34-C26- C35

115.2504

C3-C2-H8

120.7338

C6-O15-C12

107.3502

C28-C27-H34

121.282

C2-C3-C4

120.2855

C4-C16-O20

127.2201

C28-C27-H38

119.5377

C2-C3-C17

128.6913

C4-C16-C21

106.2361

C34-C27-H38

119.1801

C4-C3-C17

111.0177

O20-C16-C21

126.5389

C25-C28-H27

117.4084

C3-C4-C5

120.5697

C3-C17-H18

112.3595

C25-C28-C30

123.4341

C3-C4-C16

110.0995

C3-C17-H19

110.3293

H27-C28-C30

119.1569

C5-C4-C16

129.3255

C3-C17-C21

103.7193

C28-C30-C31

119.1525

C4-C5-C6

118.2778

H18-C17-H19

106.8224

C28-C30-C32

120.2186

C4-C5-C9

133.1514

H18-C17-C21

111.8902

C31-C30-C32

120.6289

C6-C5-C9

108.5203

C19-C17-C21

111.8123

C30-C32-H33

120.0798

C1-C6-C5

122.3103

C16-C21-C17

108.8148

C30-C32-H36

120.4003

C1-C6-O15

124.3643

C16-C21-H22

119.1896

C33-C32-H36

119.5198

C5-C6-O15

113.3246

C17-C21-H22

131.8969

C26-C34-H27

118.9995

C5-C9-H10

110.6353

C21-C22-H23

114.2978

C32-C36-H37

119.4032

C5-C9-H11

113.058

C21-C22-C24

129.6375

C32-C36-H38

120.7067

C5-C9-C12

101.1396

H23-C22-C24

116.0475

C37-C36-H38

119.8901

H10-C9-H11

107.0772

C22-C24-C25

123.8786

C27-C36-H38

119.9795

H10-C9-C12

112.2751

C22-C24-C26

121.483

C27-C36-H39

117.9387

H11-C9-C12

112.7172

C25-C24-C26

114.6289

C38-C38- C39

122.0818

C9-C12-H13

111.6315

C24-C25-C28

121.7644

-

-

 


Global descriptor analysis:

The pictorial representation of HOMO-LUMO orbitals is given in Figure 3. The electronic parameters such as EHOMO, ELUMO, ionization enthalpy (I), and electron affinity are given in Table 3. The quantum chemical parameters like electronegativity (χ), absolute hardness (η), softness (σ), electrophilicity (ω), chemical potential (Pi) are presented in Table 4. The frontier molecular orbital (FMO) analysis suggests that the energy gap in the 2-CQMIF molecule is 3.4626 eV. The lower HOMO-LUMO energy gap demonstrates the inevitable charge transfer is happening within the molecule. The global softness (σ), and the absolute hardness (η) values are 1.7313 eV and 0.5776 eV respectively. The ease of removal of an electron is governed by its chemical potential Pi and it is likewise identified with its electronegativity (χ). A good electrophile is described by a higher value of global electrophilicity (ω) and the higher value of ω indicates good nucleophile. Our results suggest that the 2-CQMIF molecule has a higher value of global electrophilicity (ω = 5.2948 eV), so it is most likely to accept electrons readily and also would undergo nucleophilic attack easily. As Pi value increases, the ability of a molecule to lose an electron increases. The maximum charge transfer is in the title molecule is 2.5673 eV.

 

Figure 3 HOMO-LUMO pictures

 

Table 3 Electronic parameters of 2-CQMIF molecule

Parameter

Values

E (a.u.)

−1474.33

EHOMO (eV)

−6.1761

ELUMO (eV)

−2.7135

I (eV)

6.1761

A (eV)

2.7135

Eg (eV)

3.4626

 

Table 4 Global reactivity parameters of 2-CQMIF molecule

Parameter

Values

χ (eV)

4.4448

ɳ (eV)

1.7313

σ (eV-1)

0.5776

ω (eV)

5.7056

Pi (eV)

−4.4448

ΔNmax (eV)

2.5673

Dipole Moment (Debye)

5.0279

 

UV-Visible study:

The theoretical UV-Visible spectral study of 2-CQMIF molecule were performed at TD-DFT-B3LYP method with 6-311G(d,p) basis set. The theoretical UV-Visible simulation was carried out in gas phase and DMSO. The experimental UV-Visible spectrum was recorded in DMSO solvent. The theoretical and experimental UV-Visible spectra are depicted in Figure 4 and Figure 5 respectively. The computed UV-Visible data is compared with the experimental observations for the assignment of absorption signals. The UV-Visible computations were simulated up to three singlet excited states. The gas phase theoretical UV-Visible absorption signals are found at 400.39nm, 377.53nm, and 335.22 nm. The absorption peak at 400.39nm arises due to the n-p* transition. The other two peaks are comparatively more intense peaks and therefore arise due to the p -p* transitions. The theoretical UV-Visible spectrum in the DMSO solvent exhibited peaks at 388.77nm, 384.33 nm and 347.58nm for the first three singlet excited states. This infers that DMSO has hypsochromic shift on the first excited state and bathochromic shift on the second and third singlet excited states. This validates the correct assignment of the absorption bands. The experimental values for the absorption peaks are 384.25 nm and 337.12nm. These two peaks are rightly matching with the first and third singlet excited states recorded theoretically in DMSO solvent.

 

 

Figure 4 Simulated UV-Visible spectra of 2-CQMIF in gas phase and DMSO

 

 

Figure 5 Experimental UV-Visible spectrum of CQMIF in DMSO

 

Mulliken atomic charges:

The Mulliken atomic charges of the 2-CQMIF molecule are calculated by DFT/B3LYP method with 6-311G(d,p) basis set in the gaseous phase and are given in Table 5 and pictorial representation is given in Figure 6. Mulliken atomic charges reveal that all the hydrogen atoms have a net positive charge but H18 and H19 atoms have a more positive charge than other hydrogen atoms and therefore they are more acidic. These two hydrogen atoms are flanked between two C=C groups. Amongst, a carbon atom, the C6 atom has the highest net positive charge (0.238699) as it is attached to an electronegative oxygen atom. On the other hand C21 atom has the highest negative charge (-0.212075).

 

Figure 6 Mulliken atomic charge distribution in 2-CQMIF molecule

 

Table 5 Mulliken atomic charges in 2-CQMIF molecule

Atom

Charge

Atom

Charge

1  C

-0.063438

21  C

-0.212075

2  C

-0.071060

22  C

0.017836

3  C

-0.138021

23  H

0.137538

4  C

-0.031269

24  C

-0.104750

5  C

-0.146792

25  C

0.133430

6  C

0.238699

26 C

0.095249

7  H

0.106805

27  C

0.091854

8  H

0.083850

28  C

-0.112266

9  C

-0.167357

29  H

0.105150

10  H

0.142645

30  C

-0.062353

11  H

0.146102

31  H

0.090465

12  C

-0.012783

32  C

-0.087285

13  H

0.123688

33 H

0.102484

14  H

0.123675

34 N

-0.320277

15  O

-0.354584

35  Cl

-0.058044

16  C

0.229659

36  C

-0.084241

17  C

-0.098668

37  H

0.104824

18  H

0.148561

38  C

-0.035129

19  H

0.142213

39  H

0.109330

20  O

-0.313665

-

-

 

Vibrational Assignments:

 

Figure 7 2-CQMIF molecule with labeled rings

 

The titled 2-CQMIF molecule has 39 atoms and therefore has 111 fundamental modes of vibration according to 3N–6 formula. The 2-CQMIF molecule has labeled according rings present in it (Figure 7). Essentially all 111 fundamental modes of vibrations are IR active. The harmonic-vibrational frequencies calculated for a molecule at B3LYP level using basis set 6-311G(d,p) have been represented in Table 6. The comparison has been made between observed frequencies with scaled frequencies DFT hybrid B3LYP method, and it has been found that there is good agreement between scaled and experimental frequencies. Computed harmonic vibrational wavenumbers are usually higher than experimental ones owing to the anharmonicity of the incomplete treatment of electron correlation78. 6-311G(d,p) basis set was used to determine harmonic frequencies, which were then scaled by an acceptable scaling factor49,79.

 

Table 6 Selected experimental and scaledtheoretical vibrational assignments of 2-CQMIF molecule calculated at B3LYP/6-311G(d,p) level

Mode

Computed scaled

frequencies (cm-1)

IR Intensity

(km)

mol-1

Observed

frequencies (cm-1)

Assignments

110

3196.23

9.74

-

v C-H (Ring A)

109

3193.24

1.67

-

v C22-H

107

3189.33

2.43

-

v C1-H, C2-H

106

3182.212

26.07

-

ν asym C9-H2, ν asym C12-H2

100

3127.53

8.49

-

v sym C9-H2

99

3117.72

55.12

-

ν sym C12-H2

98

3092.74

7.82

-

ν sym C17-H2

96

1626.98

26.04

1620.21

v C=C (Ring D)

95

1602.06

16.04

-

v C=C (ring D)

93

1546.38

104.51

-

v C=C (C21-C22)

91

1503.24

17.40

1473.62

v C=C (Ring B), v C=C (C21-C22)

84

1365.53

48.53

1338.60

β C25-H, - C17-H2

79

1259.22

0.88

1253.73

-C12-H2

77

1225.18

10.96

1230.58

β C22-H

73

1157.92

0.73

1139.93

t-C9-H2, t-C12-H2, β C1-H, β C2-H

58

924.78

33.57

929.69

C9-H2

52

868.06

1.22

864.11

γ C1-H, γ C2-H

48

836.14

10.02

819.75

t-C12-H2

46

776.28

33.56

771.53

β-H (Ring A)

38

684.67

5.50

684.73

γ C1-H, γ C22-H, γ C30-H, γ C39-H, Ring A,B,C, D, E def

v- stretching; sym- symmetric; asym- asymmetric; def- deformation; β- In-plane bending; γ- Out of plane bending; ρ- rocking; t- twisting; - wagging; - scissoring

 

Thermodynamic properties:

The thermodynamic data of 2-CQMIF molecule obtained from DFT method at B3LYP/6-311G(d, p) level is presented in Table 7. Here in this, Etotal, Heat Capacity at constant volume, total entropy S, zero point vibrational Energy and Rotational constants have been presented. The data revealed in this could be useful for the further assessment of the other thermodynamic properties.

 

Table 7 Thermodynamic properties of the title molecule

Parameter

Value

E total (kcal mol-1)

Translational            

Rotational

Vibrational

194.867            

0.889

0.889

193.090

Heat Capacity at constant volume,

Cv (cal mol-1K-1)

Translational

Rotational

Vibrational

74.163            

 

2.981

2.981

68.202            

Total entropy S (cal mol-1K-1)

Translational

Rotational

Vibrational

131.895

43.427

35.877

52.591

Zero point Vibrational Energy Ev0 (kcal mol-1)

184.02385

Rotational constants (GHZ)

0.41718    

0.09596    

0.07870

 

Molecular electrostatic potential surface analysis:

MEP plot is given in Figure 8. The phenomena like nucleophilic and electrophilic sites, solvent effects, hydrogen bonding interactions, etc. could be determined by the use of a molecular electrostatic potential. MEP is primarily used to find out the reactive sites of molecules empower to anticipate how one particle can interact with other molecules. The different values of the electrostatic potential at the surface of the molecule are represented by distinct colours. The red and yellow regions correspond to the region of high electron density and are associated with electrophilic reactivity. On the other hand, the blue parts represent low electron density and susceptible to nucleophilic reactivity and green colours represent regions of zero potential, respectively. The MEP surface analysis indicates that the benzene ring attached to the dihydrofuran ring is highly susceptible to aromatic electrophilic substitution reactions and quinoline moiety is prone to nucleophilic attacks.

 

Figure 8. Molecular electrostatic potential

 

CONCLUSIONS:

In conclusion, structural, chemical and spectroscopic aspects of titled compound 2-CQMIF have been explored by utilizing DFT strategy at B3LYP/6-311G(d,p), and  TD-DFT at B3LYP/6-311G(d,p) basis set. The molecule title molecule is having C1 point group symmetry and the dipole moment is 5.0279 Debye.  Structural parameters are examined to comprehend understand the chemical structure of the title molecule. The lower energy gap in the titled molecule demonstrates the inevitable charge transfer is happening within the molecule. Our results suggest that the title molecule is most likely to accept electrons promptly and furthermore would go through nucleophilic attack easily. The comparison between the theoretical and experimental spectral analysis shows good agreement. The investigation uncovered that the first singlet excited state arises due to the n- p* transition. The MEP surface analysis shows that the benzene fused to dihydrofuran ring is highly susceptible to aromatic electrophilic substitution reactions and quinoline structure is prone to nucleophilic attacks. This study could provide a ladder for the further exploration of the title molecule in various fields.

 

ACKNOWLEDGEMENT:

Authors are grateful to Prof. (Dr.) A. B. Sawant for his guidance for the Gaussian study. Authors acknowledge Department of Chemistry, Arts, Science and Commerce College, Manmad, MS, India for research facilities.

 

CONFLICT OF INTEREST:

The authors declare no conflict of interest.

 

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Received on 24.01.2021            Modified on 20.05.2021

Accepted on 30.07.2021           © RJPT All right reserved

Research J. Pharm.and Tech 2022; 15(3):1101-1108.

DOI: 10.52711/0974-360X.2022.00184