Computational Study on Molecular Structure, UV-Visible and Vibrational Spectra and Frontier Molecular Orbital Analysis of
(E)-7-((2-Chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one
Vishnu A. Adole1*, Abhijit R. Bukane1, Ravindra H. Waghchaure2, Rohit S. Shinde,
Bapu S. Jagdale1
1Department of Chemistry, Mahatma Gandhi Vidyamandir’s Arts, Science and Commerce College,
Manmad, Nashik - 423104, India (Affiliated to SP Pune University, Pune)
2Department of Chemistry, Mahant Jamanadas Maharaj Arts, Commerce and Science College,
Karanjali, Taluka - Peth, District – Nashik - 422 208, India (Affiliated to SP Pune University, Pune)
*Corresponding Author E-mail: vishnuadole86@gmail.com
ABSTRACT:
Quinoline scaffold is one of the most often perceived parts in biologically active organic compounds. In light of this, an quinoline containing 2-arylidene derivative; (E)-7-((2-chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one (2-CQMIF) is studied by using density functional theory (DFT) at B3LYP/6-311G(d,p) basis set. The geometry of the 2-CQMIF molecule was optimized by using B3LYP/6-311G(d,p) basis set and in-depth structural analysis on bond lengths and bond angles has been discussed. The frontier molecular orbital (FMO) analysis and various quantum chemical parameters are calculated and discussed for the better understanding of chemical behavior of the title molecule. The theoretical and experimental UV-Visible absorption bands are compared. The TD-DFT method at B3LYP/6-311G(d,p) basis set was employed to predict the electronic excitations. The scaled theoretical vibrational assignments calculated at 6-311G(d,p) level are compared with the experimental results and the good agreement is observed between them. Molecular electrostatic potential (MEP) surface investigation is presented to understand the reactivity sites of the title molecule. Besides, some thermodynamic properties have also been computed at same level of theory.
KEYWORDS: B3LYP/6-311G(d,p), Quinoline, Time Dependent DFT, HOMO-LUMO.
INTRODUCTION:
Quinoline is a bicyclic heterocyclic moiety with massive remedial potential. Quinolines are known for their excellent antimalarial1-3, anti-inflammatory4, analgesic5, antibacterial6, antifungal7, anticancer8,9, antiviral10, anthelmintic11, antiprotozoal12, and other miscellaneous biological activities13,14. Some quinoline derivatives have also been used in the treating erectile dysfunction 15, and Alzheimer’s disease16.
Likewise 2-arylidene indanone skeleton has also received tremendous attention of the medicinal chemists due to its involvement in various applications. The diverse biological profile of compounds containing 2-arylidene indanone skeleton includes properties like antimalarial17 antioxidant18 antimicrobial19 anti-inflammatory20, etc. The structure of 2-arylidene indanone is similar to chalcones. Chalcones act as vital intermediates in synthetic organic chemistry, and additionally, they are found to show powerful and many biological properties21. The noteworthy biological activities shown by chalcones include anti-tubercular22, antihypertensive23, antioxidant24, anticancer25, antiviral26, antimicrobial27, etc.
Green chemistry based organic synthesis has expanded tremendously in past few years28-37. Researchers are currently focusing on development of green strategies for the synthesis of organic compounds of biological importance38,39. Theoretical chemistry calculations are dependent on physicochemical calculations and quantum chemistry. DFT can predict various molecular properties. Especially, different spectroscopic investigations can be achieved: UV/Vis spectra, IR and Raman frequencies and intensities, NMR chemical shifts, and spin-spin coupling constants40-44. Likewise, DFT calculations can predict HOMO-LUMO energies, bond lengths, bond angles, dihedral angles, and spectroscopic properties45-66. The comparison of theoretical calculations with experimental results provides good deal of information. By using computation results, it has become possible to arrive at reaction mechanistic pathway. DFT method via B3LYP functional has been shown to predict theoretical properties that agree well with experimental spectroscopic findings67-74. The assignment of absorption bands and, as a result, the prediction of electronic and chemical properties of molecules is found to be accurate when using the B3LYP functional with a 6-311G(d,p) basis package49,75, 76. In light of various aspects discussed above, here in this paper, we wish to report density functional theory investigation of previously synthesized (E)-7-((2-chloroquinolin-3-yl)methylene)-1,2,6,7-tetrahydro-8H-indeno[5,4-b]furan-8-one32 (2-CQMIF). To the best of our knowledge, this the first report on computational study of the title molecule.
METHODS:
Computational study:
DFT calculations were performed on an Intel (R) Core (TM) i5 computer using Gaussian-03 program package without any constraint on the geometry77. The geometry of the molecules studied in this is optimized by DFT/B3LYP method using 6-311G(d,p) basis set. The FMO analysis and quantum chemical study was performed using same basis set. The electronic excitations of title molecule have been calculated at TD-B3LYP/6-311G(d,p) level of theory for B3LYP/6-311G(d,p) optimized geometries. To investigate the reactive sites of the title molecules, the MEP was computed using the same method. All the calculations were carried out for the optimized structure in the gas phase. The experimental UV-Visible spectrum is recorded in dimethyl sulfoxide (DMSO) solvent.
RESULTS AND DISCUSSION:
Optimized Molecular Structure:
The optimized molecular structure of the title 2-CQMIF molecule is given in Figure 1. In Figure 2, the optimized molecular structures are presented along x,y and z Cartesian axes. The 2-CQMIF molecule is having C1 point group symmetry and the dipole moment is 5.0279 Debye. The optimized geometrical parameters; bond lengths and bond angles of the title molecule have been computed and presented here in Table 1 and Table 2. In the 2-CQMIF molecule, the C=O (C16-O20) bond length is 1.2169 Å and the C=C (C21-C22) bond length in alkene is 1.3453 Å. The C-Cl (C26-Cl35) bond length is 1.7713 Å. The imine bond lengths are 1.2912 Å (C26-N34) and 1.3639 Å (C27-N34). Amongst aromatic C=C bond lengths, C32-C36 bond is the longest (1.4148 Å) and the shortest is C30-C32 (1.3741 Å). Other bond lengths are also in good agreement. All the bond angles are also in good agreement.
Figure 1 Optimized molecular structure of 2-CQMIF molecule
Figure 2 Optimized molecular structures along x, y and z Cartesian axes
Table 1 Optimized geometrical parameters of 2-CQMIF molecule at B3LYP/6-311G(d,p) basis set
Bond lengths (Å) |
|||||
C1-C2 |
1.3988 |
C9-C12 |
1.547 |
C25-C28 |
1.4115 |
C1-C6 |
1.3946 |
C12-H13 |
1.0937 |
C25-H29 |
1.0815 |
C1-H7 |
1.083 |
C12-H14 |
1.0892 |
C26-N34 |
1.2912 |
C2-C3 |
1.3912 |
C12-O15 |
1.4586 |
C26-Cl35 |
1.7713 |
C2-H8 |
1.0849 |
C16-O20 |
1.2169 |
C27-H28 |
1.4247 |
C3-C4 |
1.4025 |
C16-C21 |
1.5051 |
C27-N34 |
1.3639 |
C3- C17 |
1.518 |
C17-H18 |
1.0964 |
C27-H38 |
1.4137 |
C4- C5 |
1.3884 |
C17-H19 |
1.097 |
C28-C30 |
1.4182 |
C4-C16 |
1.4785 |
C17-C21 |
1.5144 |
C30-H31 |
1.0849 |
C5- C6 |
1.3918 |
C21-C22 |
1.3453 |
C30-C32 |
1.3741 |
C5- C9 |
1.5068 |
C22-H23 |
1.0853 |
C32-H33 |
1.0838 |
C6- O15 |
1.3609 |
C22-C24 |
1.4587 |
C32-C36 |
1.4148 |
C9-H10 |
1.0947 |
C24-C25 |
1.3852 |
C36-H37 |
1.084 |
C9-H11 |
1.0908 |
C24-C26 |
1.4412 |
C36-C38 |
1.3756 |
- |
- |
- |
- |
C38-H39 |
1.0828 |
Table 2 Optimized geometrical parameters of 2-CQMIF molecule at B3LYP/6-311G(d,p) basis set
Bond angles (°) |
|||||
C2-C1-C6 |
118.6792 |
C9-C12-H14 |
114.0114 |
C24-C25-H29 |
119.831 |
C2-C1-H7 |
121.3271 |
C9-C12-O15 |
106.9746 |
C28-C25-H29 |
118.3896 |
C6-C1-H7 |
119.9937 |
H13-C12-H14 |
109.1494 |
C24-C26-H34 |
125.9158 |
C1-C2-C3 |
119.8758 |
H13-C12-O15 |
107.4423 |
C24-C26- C35 |
118.8301 |
C1-C2-H8 |
119.3895 |
H14-C12-C15 |
107.3166 |
C34-C26- C35 |
115.2504 |
C3-C2-H8 |
120.7338 |
C6-O15-C12 |
107.3502 |
C28-C27-H34 |
121.282 |
C2-C3-C4 |
120.2855 |
C4-C16-O20 |
127.2201 |
C28-C27-H38 |
119.5377 |
C2-C3-C17 |
128.6913 |
C4-C16-C21 |
106.2361 |
C34-C27-H38 |
119.1801 |
C4-C3-C17 |
111.0177 |
O20-C16-C21 |
126.5389 |
C25-C28-H27 |
117.4084 |
C3-C4-C5 |
120.5697 |
C3-C17-H18 |
112.3595 |
C25-C28-C30 |
123.4341 |
C3-C4-C16 |
110.0995 |
C3-C17-H19 |
110.3293 |
H27-C28-C30 |
119.1569 |
C5-C4-C16 |
129.3255 |
C3-C17-C21 |
103.7193 |
C28-C30-C31 |
119.1525 |
C4-C5-C6 |
118.2778 |
H18-C17-H19 |
106.8224 |
C28-C30-C32 |
120.2186 |
C4-C5-C9 |
133.1514 |
H18-C17-C21 |
111.8902 |
C31-C30-C32 |
120.6289 |
C6-C5-C9 |
108.5203 |
C19-C17-C21 |
111.8123 |
C30-C32-H33 |
120.0798 |
C1-C6-C5 |
122.3103 |
C16-C21-C17 |
108.8148 |
C30-C32-H36 |
120.4003 |
C1-C6-O15 |
124.3643 |
C16-C21-H22 |
119.1896 |
C33-C32-H36 |
119.5198 |
C5-C6-O15 |
113.3246 |
C17-C21-H22 |
131.8969 |
C26-C34-H27 |
118.9995 |
C5-C9-H10 |
110.6353 |
C21-C22-H23 |
114.2978 |
C32-C36-H37 |
119.4032 |
C5-C9-H11 |
113.058 |
C21-C22-C24 |
129.6375 |
C32-C36-H38 |
120.7067 |
C5-C9-C12 |
101.1396 |
H23-C22-C24 |
116.0475 |
C37-C36-H38 |
119.8901 |
H10-C9-H11 |
107.0772 |
C22-C24-C25 |
123.8786 |
C27-C36-H38 |
119.9795 |
H10-C9-C12 |
112.2751 |
C22-C24-C26 |
121.483 |
C27-C36-H39 |
117.9387 |
H11-C9-C12 |
112.7172 |
C25-C24-C26 |
114.6289 |
C38-C38- C39 |
122.0818 |
C9-C12-H13 |
111.6315 |
C24-C25-C28 |
121.7644 |
- |
- |
Global descriptor analysis:
The pictorial representation of HOMO-LUMO orbitals is given in Figure 3. The electronic parameters such as EHOMO, ELUMO, ionization enthalpy (I), and electron affinity are given in Table 3. The quantum chemical parameters like electronegativity (χ), absolute hardness (η), softness (σ), electrophilicity (ω), chemical potential (Pi) are presented in Table 4. The frontier molecular orbital (FMO) analysis suggests that the energy gap in the 2-CQMIF molecule is 3.4626 eV. The lower HOMO-LUMO energy gap demonstrates the inevitable charge transfer is happening within the molecule. The global softness (σ), and the absolute hardness (η) values are 1.7313 eV and 0.5776 eV respectively. The ease of removal of an electron is governed by its chemical potential Pi and it is likewise identified with its electronegativity (χ). A good electrophile is described by a higher value of global electrophilicity (ω) and the higher value of ω indicates good nucleophile. Our results suggest that the 2-CQMIF molecule has a higher value of global electrophilicity (ω = 5.2948 eV), so it is most likely to accept electrons readily and also would undergo nucleophilic attack easily. As Pi value increases, the ability of a molecule to lose an electron increases. The maximum charge transfer is in the title molecule is 2.5673 eV.
Figure 3 HOMO-LUMO pictures
Table 3 Electronic parameters of 2-CQMIF molecule
Parameter |
Values |
E (a.u.) |
−1474.33 |
EHOMO (eV) |
−6.1761 |
ELUMO (eV) |
−2.7135 |
I (eV) |
6.1761 |
A (eV) |
2.7135 |
Eg (eV) |
3.4626 |
Table 4 Global reactivity parameters of 2-CQMIF molecule
Parameter |
Values |
χ (eV) |
4.4448 |
ɳ (eV) |
1.7313 |
σ (eV-1) |
0.5776 |
ω (eV) |
5.7056 |
Pi (eV) |
−4.4448 |
ΔNmax (eV) |
2.5673 |
Dipole Moment (Debye) |
5.0279 |
UV-Visible study:
The theoretical UV-Visible spectral study of 2-CQMIF molecule were performed at TD-DFT-B3LYP method with 6-311G(d,p) basis set. The theoretical UV-Visible simulation was carried out in gas phase and DMSO. The experimental UV-Visible spectrum was recorded in DMSO solvent. The theoretical and experimental UV-Visible spectra are depicted in Figure 4 and Figure 5 respectively. The computed UV-Visible data is compared with the experimental observations for the assignment of absorption signals. The UV-Visible computations were simulated up to three singlet excited states. The gas phase theoretical UV-Visible absorption signals are found at 400.39nm, 377.53nm, and 335.22 nm. The absorption peak at 400.39nm arises due to the n-p* transition. The other two peaks are comparatively more intense peaks and therefore arise due to the p -p* transitions. The theoretical UV-Visible spectrum in the DMSO solvent exhibited peaks at 388.77nm, 384.33 nm and 347.58nm for the first three singlet excited states. This infers that DMSO has hypsochromic shift on the first excited state and bathochromic shift on the second and third singlet excited states. This validates the correct assignment of the absorption bands. The experimental values for the absorption peaks are 384.25 nm and 337.12nm. These two peaks are rightly matching with the first and third singlet excited states recorded theoretically in DMSO solvent.
Figure 4 Simulated UV-Visible spectra of 2-CQMIF in gas phase and DMSO
Figure 5 Experimental UV-Visible spectrum of CQMIF in DMSO
Mulliken atomic charges:
The Mulliken atomic charges of the 2-CQMIF molecule are calculated by DFT/B3LYP method with 6-311G(d,p) basis set in the gaseous phase and are given in Table 5 and pictorial representation is given in Figure 6. Mulliken atomic charges reveal that all the hydrogen atoms have a net positive charge but H18 and H19 atoms have a more positive charge than other hydrogen atoms and therefore they are more acidic. These two hydrogen atoms are flanked between two C=C groups. Amongst, a carbon atom, the C6 atom has the highest net positive charge (0.238699) as it is attached to an electronegative oxygen atom. On the other hand C21 atom has the highest negative charge (-0.212075).
Figure 6 Mulliken atomic charge distribution in 2-CQMIF molecule
Table 5 Mulliken atomic charges in 2-CQMIF molecule
Atom |
Charge |
Atom |
Charge |
1 C |
-0.063438 |
21 C |
-0.212075 |
2 C |
-0.071060 |
22 C |
0.017836 |
3 C |
-0.138021 |
23 H |
0.137538 |
4 C |
-0.031269 |
24 C |
-0.104750 |
5 C |
-0.146792 |
25 C |
0.133430 |
6 C |
0.238699 |
26 C |
0.095249 |
7 H |
0.106805 |
27 C |
0.091854 |
8 H |
0.083850 |
28 C |
-0.112266 |
9 C |
-0.167357 |
29 H |
0.105150 |
10 H |
0.142645 |
30 C |
-0.062353 |
11 H |
0.146102 |
31 H |
0.090465 |
12 C |
-0.012783 |
32 C |
-0.087285 |
13 H |
0.123688 |
33 H |
0.102484 |
14 H |
0.123675 |
34 N |
-0.320277 |
15 O |
-0.354584 |
35 Cl |
-0.058044 |
16 C |
0.229659 |
36 C |
-0.084241 |
17 C |
-0.098668 |
37 H |
0.104824 |
18 H |
0.148561 |
38 C |
-0.035129 |
19 H |
0.142213 |
39 H |
0.109330 |
20 O |
-0.313665 |
- |
- |
Vibrational Assignments:
Figure 7 2-CQMIF molecule with labeled rings
The titled 2-CQMIF molecule has 39 atoms and therefore has 111 fundamental modes of vibration according to 3N–6 formula. The 2-CQMIF molecule has labeled according rings present in it (Figure 7). Essentially all 111 fundamental modes of vibrations are IR active. The harmonic-vibrational frequencies calculated for a molecule at B3LYP level using basis set 6-311G(d,p) have been represented in Table 6. The comparison has been made between observed frequencies with scaled frequencies DFT hybrid B3LYP method, and it has been found that there is good agreement between scaled and experimental frequencies. Computed harmonic vibrational wavenumbers are usually higher than experimental ones owing to the anharmonicity of the incomplete treatment of electron correlation78. 6-311G(d,p) basis set was used to determine harmonic frequencies, which were then scaled by an acceptable scaling factor49,79.
Table 6 Selected experimental and scaledtheoretical vibrational assignments of 2-CQMIF molecule calculated at B3LYP/6-311G(d,p) level
Mode |
Computed scaled frequencies (cm-1) |
IR Intensity (km) mol-1 |
Observed frequencies (cm-1) |
Assignments |
110 |
3196.23 |
9.74 |
- |
v C-H (Ring A) |
109 |
3193.24 |
1.67 |
- |
v C22-H |
107 |
3189.33 |
2.43 |
- |
v C1-H, C2-H |
106 |
3182.212 |
26.07 |
- |
ν asym C9-H2, ν asym C12-H2 |
100 |
3127.53 |
8.49 |
- |
v sym C9-H2 |
99 |
3117.72 |
55.12 |
- |
ν sym C12-H2 |
98 |
3092.74 |
7.82 |
- |
ν sym C17-H2 |
96 |
1626.98 |
26.04 |
1620.21 |
v C=C (Ring D) |
95 |
1602.06 |
16.04 |
- |
v C=C (ring D) |
93 |
1546.38 |
104.51 |
- |
v C=C (C21-C22) |
91 |
1503.24 |
17.40 |
1473.62 |
v C=C (Ring B), v C=C (C21-C22) |
84 |
1365.53 |
48.53 |
1338.60 |
β C25-H, - C17-H2 |
79 |
1259.22 |
0.88 |
1253.73 |
-C12-H2 |
77 |
1225.18 |
10.96 |
1230.58 |
β C22-H |
73 |
1157.92 |
0.73 |
1139.93 |
t-C9-H2, t-C12-H2, β C1-H, β C2-H |
58 |
924.78 |
33.57 |
929.69 |
C9-H2 |
52 |
868.06 |
1.22 |
864.11 |
γ C1-H, γ C2-H |
48 |
836.14 |
10.02 |
819.75 |
t-C12-H2 |
46 |
776.28 |
33.56 |
771.53 |
β-H (Ring A) |
38 |
684.67 |
5.50 |
684.73 |
γ C1-H, γ C22-H, γ C30-H, γ C39-H, Ring A,B,C, D, E def |
v- stretching; sym- symmetric; asym- asymmetric; def- deformation; β- In-plane bending; γ- Out of plane bending; ρ- rocking; t- twisting; - wagging; - scissoring
Thermodynamic properties:
The thermodynamic data of 2-CQMIF molecule obtained from DFT method at B3LYP/6-311G(d, p) level is presented in Table 7. Here in this, Etotal, Heat Capacity at constant volume, total entropy S, zero point vibrational Energy and Rotational constants have been presented. The data revealed in this could be useful for the further assessment of the other thermodynamic properties.
Table 7 Thermodynamic properties of the title molecule
Parameter |
Value |
E total (kcal mol-1) Translational Rotational Vibrational |
194.867 0.889 0.889 193.090 |
Heat Capacity at constant volume, Cv (cal mol-1K-1) Translational Rotational Vibrational |
74.163
2.981 2.981 68.202 |
Total entropy S (cal mol-1K-1) Translational Rotational Vibrational |
131.895 43.427 35.877 52.591 |
Zero point Vibrational Energy Ev0 (kcal mol-1) |
184.02385 |
Rotational constants (GHZ) |
0.41718 0.09596 0.07870 |
Molecular electrostatic potential surface analysis:
MEP plot is given in Figure 8. The phenomena like nucleophilic and electrophilic sites, solvent effects, hydrogen bonding interactions, etc. could be determined by the use of a molecular electrostatic potential. MEP is primarily used to find out the reactive sites of molecules empower to anticipate how one particle can interact with other molecules. The different values of the electrostatic potential at the surface of the molecule are represented by distinct colours. The red and yellow regions correspond to the region of high electron density and are associated with electrophilic reactivity. On the other hand, the blue parts represent low electron density and susceptible to nucleophilic reactivity and green colours represent regions of zero potential, respectively. The MEP surface analysis indicates that the benzene ring attached to the dihydrofuran ring is highly susceptible to aromatic electrophilic substitution reactions and quinoline moiety is prone to nucleophilic attacks.
Figure 8. Molecular electrostatic potential
CONCLUSIONS:
In conclusion, structural, chemical and spectroscopic aspects of titled compound 2-CQMIF have been explored by utilizing DFT strategy at B3LYP/6-311G(d,p), and TD-DFT at B3LYP/6-311G(d,p) basis set. The molecule title molecule is having C1 point group symmetry and the dipole moment is 5.0279 Debye. Structural parameters are examined to comprehend understand the chemical structure of the title molecule. The lower energy gap in the titled molecule demonstrates the inevitable charge transfer is happening within the molecule. Our results suggest that the title molecule is most likely to accept electrons promptly and furthermore would go through nucleophilic attack easily. The comparison between the theoretical and experimental spectral analysis shows good agreement. The investigation uncovered that the first singlet excited state arises due to the n- p* transition. The MEP surface analysis shows that the benzene fused to dihydrofuran ring is highly susceptible to aromatic electrophilic substitution reactions and quinoline structure is prone to nucleophilic attacks. This study could provide a ladder for the further exploration of the title molecule in various fields.
ACKNOWLEDGEMENT:
Authors are grateful to Prof. (Dr.) A. B. Sawant for his guidance for the Gaussian study. Authors acknowledge Department of Chemistry, Arts, Science and Commerce College, Manmad, MS, India for research facilities.
CONFLICT OF INTEREST:
The authors declare no conflict of interest.
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Received on 24.01.2021 Modified on 20.05.2021
Accepted on 30.07.2021 © RJPT All right reserved
Research J. Pharm.and Tech 2022; 15(3):1101-1108.
DOI: 10.52711/0974-360X.2022.00184